Handling Massive N-Gram Datasets Efficiently

This paper deals with the two fundamental problems concerning the handling of large n-gram language models: indexing, that is compressing the n-gram strings and associated satellite data without compromising their retrieval speed; and estimation, that is computing the probability distribution of the strings from a large textual source. Regarding the problem of indexing, we describe compressed, exact and lossless data structures that achieve, at the same time, high space reductions and no time degradation with respect to state-of-the-art solutions and related software packages. In particular, we present a compressed trie data structure in which each word following a context of fixed length k, i.e., its preceding k words, is encoded as an integer whose value is proportional to the number of words that follow such context. Since the number of words following a given context is typically very small in natural languages, we lower the space of representation to compression levels that were never achieved before. Despite the significant savings in space, our technique introduces a negligible penalty at query time. Regarding the problem of estimation, we present a novel algorithm for estimating modified Kneser-Ney language models, that have emerged as the de-facto choice for language modeling in both academia and industry, thanks to their relatively low perplexity performance. Estimating such models from large textual sources poses the challenge of devising algorithms that make a parsimonious use of the disk. The state-of-the-art algorithm uses three sorting steps in external memory: we show an improved construction that requires only one sorting step thanks to exploiting the properties of the extracted n-gram strings. With an extensive experimental analysis performed on billions of n-grams, we show an average improvement of 4.5X on the total running time of the state-of-the-art approach.Comment: Published in ACM Transactions on Information Systems (TOIS), February 2019, Article No: 2

On Optimally Partitioning Variable-Byte Codes

The ubiquitous Variable-Byte encoding is one of the fastest compressed representation for integer sequences. However, its compression ratio is usually not competitive with other more sophisticated encoders, especially when the integers to be compressed are small that is the typical case for inverted indexes. This paper shows that the compression ratio of Variable-Byte can be improved by 2x by adopting a partitioned representation of the inverted lists. This makes Variable-Byte surprisingly competitive in space with the best bit-aligned encoders, hence disproving the folklore belief that Variable-Byte is space-inefficient for inverted index compression. Despite the significant space savings, we show that our optimization almost comes for free, given that: we introduce an optimal partitioning algorithm that does not affect indexing time because of its linear-time complexity; we show that the query processing speed of Variable-Byte is preserved, with an extensive experimental analysis and comparison with several other state-of-the-art encoders.Comment: Published in IEEE Transactions on Knowledge and Data Engineering (TKDE), 15 April 201

On optimally partitioning a text to improve its compression

In this paper we investigate the problem of partitioning an input string T in such a way that compressing individually its parts via a base-compressor C gets a compressed output that is shorter than applying C over the entire T at once. This problem was introduced in the context of table compression, and then further elaborated and extended to strings and trees. Unfortunately, the literature offers poor solutions: namely, we know either a cubic-time algorithm for computing the optimal partition based on dynamic programming, or few heuristics that do not guarantee any bounds on the efficacy of their computed partition, or algorithms that are efficient but work in some specific scenarios (such as the Burrows-Wheeler Transform) and achieve compression performance that might be worse than the optimal-partitioning by a $\Omega(\sqrt{\log n})$ factor. Therefore, computing efficiently the optimal solution is still open. In this paper we provide the first algorithm which is guaranteed to compute in O(n \log_{1+\eps}n) time a partition of T whose compressed output is guaranteed to be no more than $(1+\epsilon)$-worse the optimal one, where $\epsilon$ may be any positive constant

Bicriteria data compression

The advent of massive datasets (and the consequent design of high-performing distributed storage systems) have reignited the interest of the scientific and engineering community towards the design of lossless data compressors which achieve effective compression ratio and very efficient decompression speed. Lempel-Ziv's LZ77 algorithm is the de facto choice in this scenario because of its decompression speed and its flexibility in trading decompression speed versus compressed-space efficiency. Each of the existing implementations offers a trade-off between space occupancy and decompression speed, so software engineers have to content themselves by picking the one which comes closer to the requirements of the application in their hands. Starting from these premises, and for the first time in the literature, we address in this paper the problem of trading optimally, and in a principled way, the consumption of these two resources by introducing the Bicriteria LZ77-Parsing problem, which formalizes in a principled way what data-compressors have traditionally approached by means of heuristics. The goal is to determine an LZ77 parsing which minimizes the space occupancy in bits of the compressed file, provided that the decompression time is bounded by a fixed amount (or vice-versa). This way, the software engineer can set its space (or time) requirements and then derive the LZ77 parsing which optimizes the decompression speed (or the space occupancy, respectively). We solve this problem efficiently in O(n log^2 n) time and optimal linear space within a small, additive approximation, by proving and deploying some specific structural properties of the weighted graph derived from the possible LZ77-parsings of the input file. The preliminary set of experiments shows that our novel proposal dominates all the highly engineered competitors, hence offering a win-win situation in theory&practice

Compressed Text Indexes:From Theory to Practice!

A compressed full-text self-index represents a text in a compressed form and still answers queries efficiently. This technology represents a breakthrough over the text indexing techniques of the previous decade, whose indexes required several times the size of the text. Although it is relatively new, this technology has matured up to a point where theoretical research is giving way to practical developments. Nonetheless this requires significant programming skills, a deep engineering effort, and a strong algorithmic background to dig into the research results. To date only isolated implementations and focused comparisons of compressed indexes have been reported, and they missed a common API, which prevented their re-use or deployment within other applications. The goal of this paper is to fill this gap. First, we present the existing implementations of compressed indexes from a practitioner's point of view. Second, we introduce the Pizza&Chili site, which offers tuned implementations and a standardized API for the most successful compressed full-text self-indexes, together with effective testbeds and scripts for their automatic validation and test. Third, we show the results of our extensive experiments on these codes with the aim of demonstrating the practical relevance of this novel and exciting technology

Compressed String Dictionary Search with Edit Distance One

In this paper we present different solutions for the problem of indexing a dictionary of strings in compressed space. Given a pattern (Formula presented.) , the index has to report all the strings in the dictionary having edit distance at most one with (Formula presented.). Our first solution is able to solve queries in (almost optimal) (Formula presented.) time where (Formula presented.) is the number of strings in the dictionary having edit distance at most one with (Formula presented.). The space complexity of this solution is bounded in terms of the (Formula presented.) th order entropy of the indexed dictionary. A second solution further improves this space complexity at the cost of increasing the query time. Finally, we propose randomized solutions (Monte Carlo and Las Vegas) which achieve simultaneously the time complexity of the first solution and the space complexity of the second one

Space-Efficient Substring Occurrence Estimation

In this paper we study the problem of estimating the number of occurrences of substrings in textual data: A text T on some alphabet Σ=[σ] of length n is preprocessed and an index I is built. The index is used in lieu of the text to answer queries of the form Count≈(P), returning an approximated number of the occurrences of an arbitrary pattern $$P$$P as a substring of T. The problem has its main application in selectivity estimation related to the LIKE predicate in textual databases. Our focus is on obtaining an algorithmic solution with guaranteed error rates and small footprint. To achieve that, we first enrich previous work in the area of compressed text-indexing providing an optimal data structure that, for a given additive error ℓ≥1, requires Θnℓlogσ bits. We also approach the issue of guaranteeing exact answers for sufficiently frequent patterns, providing a data structure whose size scales with the amount of such patterns. Our theoretical findings are supported by experiments showing the practical impact of our data structures